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[LSDB Cross Search] One database has been added to Life Science Database Cross Search

The following database has been added to the search index of Life Science Database Cross Search.
  • [NPEdia (Natural Products Encyclopedia)]:This is a search tool for compounds in RIKEN Natural products depository (RIKEN NPdepo). Each entry contains Compound name, CAS No., molecular weight, structure, InChI key, biological activity, sourse organisms, etc.. This database allows to search using compound ID, compound name, InChIKey or chemical structure.

[LSDB Cross Search] 2 databases have been added to Life Science Database Cross Search

Following 2 databases have been added to the search index of Life Science Database Cross Search.
  • [RESOPS]:RESOPS is a database for analyzing the correspondence of RNA editing sites to protein 3D structures. RNA editing data mapped onto amino acid sequence data can be downloaded. The database contains information on amino acid conversion pattern and correspondence to the protein 3D structure data auto-calculated based on these data.
  • [PSCDB]:The PSCDB contains information on the relationship between protein structural changes and ligand binding. Structural changes are classified into seven distinct classes based on the location of the ligand binding site and the mechanism underlying the structural change.

Announcement: Revision of Site Policies

We will revise “Site Policies” on March 13th, 2019.
The changes are shown in the following file.
Comparative Table of Prior and Amended Article Provisions

For any enquiries about this announcement, please emailemail_kikaku

BioHackathon 2018 held in Matsue, Japan

The National Bioscience Database Center (NBDC) and the Database Center for Life Science (DBCLS) held the BioHackathon 2018 from 9th to 15th December 2018, in Matsue, Shimane, Japan.

Dates:
Dec. 9 (Sun) to 15 (Sat), 2018
Venue:
Hotel Ichibata (Matsue, Japan)
Report:
JST topics

 

Participants discussing at BioHackathon 2018

 

Exhibition and Workshop at Annual Meeting of the Molecular Biology Society of Japan

NBDC and related research organizations will exhibit at the 41st Annual Meeting of the Molecular Biology Society of Japan. We are looking forward to welcoming you in Yokohama.

Group Exhibition: BioDB Corner

https://events.biosciencedbc.jp/exhibition/mbsj41 (Japanese text only.)

  • Date: Nov. 28 (Wed) to Nov. 30 (Fri), 2018, 10:00 am to 5:00 pm (closes at 3:30 pm on 30th)
  • Venue: Exhibition Hall, PACIFICO Yokohama (Yokohama, Japan)
  • Participating databases and organizations: NBDC, DBCLS, MEDALS, NIBIOHN, DBKERO, KEGG, MicrobeDB.jp, PGDBj, ChIP-Atlas, jPOST, GlyCosmos, PDBj, DDBJ, etc.

Workshop: How to use the databases and tools in life science

https://www2.aeplan.co.jp/mbsj2018/english/workshop/index.html

  • Date: Nov. 28 (Wed), 2018, 5:30 pm to 7:00 pm
  • Venue: Room 9, Conference Center 4F, PACIFICO Yokohama (Yokohama, Japan)
  • Language: Japanese

BioHackathon 2018 in Matsue, Japan (Dec. 9 to 15)

The 11th NBDC/DBCLS BioHackathon will be held from 9th through 15th December 2018, in Matsue, Shimane, Japan.biohackathon 2018

The NBDC/DBCLS BioHackathon series have been contributing for integration and utilization of life sciences and biomedical databases. In this year, in addition to our continuous efforts on promoting the development for standardization and interoperability of life sciences / biomedical databases and their applications in data science, we are particularly interested in developing application cases of those tools in the fields of medical application, useful substance production, and breeding.

Registration is open until Nov. 11th, 2018.

BioHackathon 2018

http://2018.biohackathon.org/

  • Symposium: Dec. 9 (Sun), 2018 @ Hotel Ichibata in Matsue, Shimane, Japan
  • Hackathon: Dec. 10 (Mon) - 15 (Sat) @ Hotel Ichibata in Matsue, Shimane, Japan

3rd RDF Workshop on Nov. 1, 2018 at JST Tokyo HQ

NBDC and DBCLS are supporting data integration in RDF (Resource Description Framework) format.

On Nov. 1, 2018, NBDC will co-host the "3rd RDF Workshop" at JST Tokyo Headquarters. This workshop will focus on "How to make RDF data from your own data."

3rd RDF Workshop

http://wiki.lifesciencedb.jp/mw/RDF-Tutorial3

  • Date: Nov. 1 (Thu), 2018, 10:00 am to 4:00 pm
  • Venue: Tokyo Headquarters K's Gobancho 2F Meeting room A (Tokyo, Japan)
  • Participation fee: Free
  • Registration: Register at the event website by 12:00 pm on Oct. 29 (Mon).
  • Language: Japanese
  • Hosted by: DBCLS
  • Co-hosted by: NBDC
  • Contact: Office of AJACS seminar AJACS[AT]biosciencedbc.jp

Seminar at the Annual Meeting of the Japan Society of Human Genetics

NBDC will co-host a seminar at the 63rd Annual Meeting of the Japan Society of Human Genetics (Oct. 10 to 13, 2018, at PACIFICO Yokohama). We will also exhibit at the venue from Oct. 11 to 13.

Sponsored Seminar:
NBDC Human Database and TogoVar to contribute toward human genetic research

Date: Oct. 11 (Thu), 2018, 3:30 pm to 4:30 pm
Venue:Room3 (303, 3F), PACIFICO Yokohama (Yokohama, Japan)
Language: Japanese
Website: http://www.congre.co.jp/jshg2018/en/index.html

System Maintenance of the front page of LSDB Archive and Integbio Database Catalog(10:00 JST on Wednesday, October 10 - 18:00 JST on Thursday, October 11)

The front page of LSDB Archive and Integbio Database Catalog (see the following) will be temporarily unavailable for system maintenance.
We apologize for the inconvenience.

Date:
10:00 JST on Wednesday, October 10 - 18:00 JST on Thursday, October 11

Services concerned:

  • The front page of LSDB Archive
  • Integbio Database Catalog
The following services will be available despite the above system maintenance. You can link the services directly. Thank you for your cooperation.

【Revision of Site Policies (Integbio.jp)】We will revise “Site Policies” of Integbio.jp on September 3rd, 2018.

We will revise “Site Policies” of Integbio.jp (including Integbio Database Catalog) on September 3rd, 2018. The changes are shown in the following file: Comparative Table of Prior and Amended Article Provisions. For any enquiries about this announcement, please email integbio.

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