Development of a new platform for plant genome information analyses toward an era of individual genomes

Category

Name and affiliation of Research Director

Outline of R&D

We aim to expand and improve present Plant Genome DataBase Japan (PGDBj) by implementing new function that enables users to compare and utilize various genome-related information such as genomic sequences, transcripts and DNA markers among multiple plant species. Furthermore, a web-based tool for SNP typing and haplotype analysis with the NGS data submitted by the users will be developed for the upcoming era of individual genome sequencing in plant species.

Main database(s) subject to research and development

• Plant GARDEN

Period of research and development

April 2017 to March 2022

Documents

Presentation documents

• July 6, 2017: Kickoff Meeting (5.4 MB)

Reports

• FY2017 (0.9 MB)
• FY2018 (0.6 MB)
• Mid-term Report (1.0 MB)
• FY2019 (0.8 MB)
• FY2020 (1.5 MB)
• Final Report (1.0 MB)

Evaluation

• Mid-term Evaluation (0.4 MB)
• Ex-post (0.8 MB)