Construction of an integrative data platform for transcriptional regulations

Category

  • In progress
  • Database Integration Coordination Program (DICP)
  • Projects funded in FY 2022_Full-fledged

Name and affiliation of Research Director

KASUKAWA Takeya

Team Leader, Center for Integrative Medical Sciences, Riken

Outline of R&D

We construct an integrative data platform, INTRARED, with cis-regulatory elements (CRE), trans-factors and epigenomics data in order to support the comprehensive understanding of the transcriptional regulations. INTRARED consists of two core databases, fanta.bio and ChIP-Atlas, and shows their consolidated views. fanta.bio provides the genomic coordination and their activities for each cell types and conditions about CREs, which are genomics elements regulating transcriptions in the same chromosomes, and ChIP-Atlas provides the information of trans-factors and related epigenomes.

Main database(s) subject to research and development

INTRARED

Period of research and development

Apr 2022 to Mar 2027

DocumentsOnly in Japanese

Reports

Grant Number

JPMJND2202

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