Construction of an integrative data platform for transcriptional regulations

In progress
Database Integration Coordination Program (DICP)
Projects funded in FY 2022-Full-fledged

KASUKAWA Takeya

Team Leader, Center for Integrative Medical Sciences, Riken

We construct an integrative data platform, INTRARED, with cis-regulatory elements (CRE), trans-factors and epigenomics data in order to support the comprehensive understanding of the transcriptional regulations. INTRARED consists of two core databases, fanta.bio and ChIP-Atlas, and shows their consolidated views. fanta.bio provides the genomic coordination and their activities for each cell types and conditions about CREs, which are genomics elements regulating transcriptions in the same chromosomes, and ChIP-Atlas provides the information of trans-factors and related epigenomes.