An extension of biochemical reaction network analysis environment

Category

  • Completed
  • DICP Tool Prototype Trial for Integrated Database Analysis
  • Projects funded in FY 2014

Name and affiliation of Research Director

NISHIDA Kozo

Technical staff, Quantitative Biology Center, RIKEN

Outline of R&D

In last fiscal year, we have developed a software environment of a biochemical reaction network analysis, integrating multi-omics, pathway and drug target. E. coli. has been only supported in the software platform. In this fiscal year, we reorganize the workflow of the software environment, and add new framework of a Cyberinfrastructure proposed by Cytoscape. We then extend our target organism to Arabidopsis thaliana, demonstrating the versatility of our analysis environment.

Main database(s) subject to research and development

Period of research and development

September 2014 to February 2015

DocumentsOnly in Japanese

Presentation documents

Reports

EvaluationOnly in Japanese

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