Development of functional and interactive database for proteomics

Category

  • In progress
  • Database Integration Coordination Program (DICP)
  • Projects funded in FY 2018

Name and affiliation of Research Director

ISHIHAMA Yasushi

Professor, Graduate School of Pharmaceutical Sciences, Kyoto University

Outline of R&D

We will develop an integrated proteome database jPOST (Japan Proteame STandard Repository / Database) containing standardized, integrated and unified proteomic information from a wide variety of biological species with posttranslational modifications at various absolute expression levels. Based on the international standard repositories and the ability to re-analyze the raw data to produce higher-precision data, we will further develop more functions for jPOST to receive wider ranges of proteomic data. In addition, by linking with other omics data, we can map the biomolecules to signal transduction network and metabolic network to elucidate their cellular functions. The jPOST also accepts the proteogenomics data as well as metaproteomics data from gut microbiota, metabolomics data and glycomics data.

Main database(s) subject to research and development

Period of research and development

April 2018 to March 2023

DocumentsOnly in Japanese

Presentation documents

Reports

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