Development of a metagenomic analysis pipeline that utilizes the MicrobeDB.jp data

Category

  • Completed
  • DICP Tool Prototype Trial for Integrated Database Analysis
  • Projects funded in FY 2013

Name and affiliation of Research Director

MORI Hiroshi

Assistant Professor , Graduate School of Bioscience and Biotechnology, Tokyo Institute of Technology

Outline of R&D

The aim of this study is to develop a web application that can analyze user-uploaded metagenomic sequence data by applying the metagenomic analysis pipeline used in the MicrobeDB.jp. This web application will provide the basic information on the microbial community (e.g., the taxonomic and functional composition). In addition, users can compare this information with other metagenomic samples exist in the MicrobeDB.jp.

Main database(s) subject to research and development

  • MeGAP

Period of research and development

September 2013 to January 2014

DocumentsOnly in Japanese

Presentation documents

Reports

EvaluationOnly in Japanese

Inquiries & opinions

Feel free to contact us if you have any questions about this website or the web-based services that NBDC provides or wish to consult with us regarding research data or databases.