AtMetExpress: a database for mass spectrometry-based metabolite profiling data in Arabidopsis and development of related tools to facilitate omics-data integration

Category

  • Completed
  • DICP Tool Prototype Trial for Integrated Database Analysis
  • Projects funded in FY 2013

Name and affiliation of Research Director

FUKUSHIMA Atsushi

Research Scientist, Metabolome Informatics Research Team, Metabolomics Research Group, Center for Sustainable Resource Science, RIKEN

Outline of R&D

The project develops AtMetExpress system, consisting of a database for mass spectrometry-based metabolite profiling data in the model plant Arabidopsis (Arabidopsis thaliana) and related tools facilitating omics-data integration. The purpose of this study is to integrate publicly available metabolome datasets with other resources at National Bioscience Database Center (NBDC) to efficiently realize knowledge discovery in plant metabolomics.

Main database(s) subject to research and development

Period of research and development

September 2013 to January 2014

DocumentsOnly in Japanese

Presentation documents

Reports

EvaluationOnly in Japanese

Inquiries & opinions

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