|
Category
|
Purpose and service name
|
Logo and link
|
Abstract
|
|
Database Integration
|
Retrieve life science database information
Integbio Database Catalog
|
|
|
|
Search RDF data with SPARQL
RDF Portal
|
|
|
|
Search, retrieve, format, and RDFize major databases with REST API
TogoWS
|
|
|
|
Search your own relational databases with SPARQL
TogoDB
|
|
|
|
Convert links between identifiers(IDs) of databases(DBs) with REST API
TogoID
|
|
|
|
Human
|
Search variant data in Japanese human genome with SPARQL
TogoVar
|
|
|
|
Search gene expression and transcription start site with SPARQL (human and mouse)
DBKERO
|
|
|
|
Genome
|
Reuse genomes, species, phenotypes, and environment (whole genome) in web app
TogoGenome
|
|
|
|
Search rapidly genome sequence with REST API
GGGenome
|
|
|
|
Gene
|
Search genes by sequence or keyword with REST API
GGRNA
|
|
|
|
Enrichment analysis of disease-related genes with REST API
Gendoo
|
|
|
|
Gene Expression
|
Search experimental datasets of gene expression with REST API
AOE
|
|
|
|
NGS
|
Search NGS raw data with REST API
DBCLS SRA
|
|
|
|
Protein
|
Search protein structures with SPARQL
PDBj
|
|
|
|
Proteome
|
Search proteome experimental data with SPARQL
jPOSTdb
|
|
|
|
Glycome
|
Search glycan information with SPARQL
GlyCosmos Portal
|
|
|
|
Disease
|
Search relevant information on rare and incurable diseases with SPARQL
PubCaseFinder
|
|
|
|
NLP
|
Search annotations in articles or other texts with SPARQL
PubAnnotation / TextAE
|
|
|
|
Search dictionaries for text mining
PubDictionaries
|
|
|
|
Search English expressions used in papers with REST API
inMeXes
|
|
|
|
Search abbreviations used in papers with SPARQL
Allie RDF Data Portal
|
|
|
|
Search citations and contexts of papers with SPARQL
Colil RDF Data Portal
|
|
|
|
Search the Life Science Dictionary with SPARQL
LSD RDF Data Portal
|
|
|
|
RDF coding
|
Convert RDB to RDF with GUI
D2RQ Mapper
|
|
|
|
Convert JSON data to JSON-LD (RDFize)
JSON2LD Mapper
|
|
|
|
Split RDF data into multiple files without collapsing blank nodes
split4blank
|
|
|
|
A guideline for RDFizing databases
RDF化ガイドライン
|
|
|
|
SPARQL search
|
View ratings for SPARQL endpoints
Umaka-Yummy Data
|
|
|
|
Visualize RDF data structure
Umaka Viewer
|
|
|
|
Visualize SPARQL search results and reuse them on any web page
TogoStanza
|
|
|
|
Customize and visualize SPARQL search results with JavaScript
d3sparql.js
|
|
|
|
Publish and reuse complex SPARQL queries as a REST API
SPARQList
|
|
|
|
Run complex SPARQL queries on the command line
SPANG
|
|
|
|
Search RDF data in SPARQL endpoints with GUI
Endpoint browser
|
|
|
|
Create SPARQL queries with GUI and search RDF data
SPARQL Builder
|
|
|
|
Search RDF data with SPARQL input support
SPARQL support
|
|
|
|
Search RDF data in GraphQL and get results from SPARQL endpoints
Grasp
|
|
|
|
Optimize and publish securely SPARQL endpoints
SPARQL-proxy
|
|
|
|
Define RDF data models to automatically generate SPARQL queries and diagrams
RDF config
|
|
|
