International Construction and Integration of Protein Structure Databank
Category
- Completed
- Database Integration Coordination Program (DICP)
- Projects funded in FY 2011
Name and affiliation of Research Director
NAKAMURA Haruki
Professor, Institute for Protein Research, Osaka University
Outline of R&D
The PDBj (Protein Data Bank Japan) has developed and managed the three-dimensional structural database for biological macromolecules through international cooperation with RCSB-PDB and BMRB in USA, and PDBe in Europe. The database includes various experimental information from X-ray crystallography, NMR, electron microscopy, and X-ray small-angle scattering experiments. In addition, ontology, new data formats, user interfaces, derived databases and various services are developed for understanding of high-order biological functions through integration with other biological databases using semantic web technology.
Main database(s) subject to research and development
Period of research and development
April 2011 to March 2014
Documents
Presentation documents
- Kickoff Meeting (2.04 MB)
- FY2011 Progress Report Meeting (3.23 MB)
- FY2012 Progress Report Meeting (3.21 MB)
- Symposium of Database Togo (Integration) 2013 (9.14 MB)
Reports
- FY2011 (313 KB)
- FY2012 (359 KB)
- Report Attachment (154 KB)
- Final Report (1.42 MB)
- Attachment (207 KB)
